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Genus Planomicrobium

Warning: In the List of Prokaryotic names with Standing in Nomenclature, an arrow () only indicates the sequence of valid publication of names and does not mean that the last name in the sequence must be used (see: Introduction).

Number of species cited in this file: 10
Number of subspecies cited in this file: 0

Classification (Warning: see also the file "Classification of prokaryotes: Introduction").


For a detailed description of this taxon see Bergey’s Manual of Systematics of Archaea and Bacteria (BMSAB).


 

Planomicrobium Yoon et al. 2001, gen. nov.
Type species: ¤ Planomicrobium koreense Yoon et al. 2001.
Etymology: Gr. n. planos, wanderer; Gr. adj. micros, small; Gr. n. bios, life; N.L. neut. n. microbium, microbe; N.L. neut. n. Planomicrobium, motile microbe.
Valid publication: YOON (J.H.), KANG (S.S.), LEE (K.C.), LEE (E.S.), KHO (Y.H.), KANG (K.H.) and PARK (Y.H.): Planomicrobium koreense gen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites (Nakagawa et al. 1996) and Planococcus mcmeekinii (Junge et al. 1998) to the genus Planomicrobium. Int. J. Syst. Evol. Microbiol., 2001, 51, 1511-1520.
Original article in IJSEM Online

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Planomicrobium alkanoclasticum (Engelhardt et al. 2001) Dai et al. 2005, comb. nov.
Type strain: (see also StrainInfo.net) MAE2 = CIP 107718 = NCIMB 13489.
Sequence accession no. (16S rRNA gene) for the type strain: AF029364.
Basonym: ¤ Planococcus alkanoclasticus Engelhardt et al. 2001.
Etymology: N.L. n. alkanum, alkane; Gr. adj. klastos, broken in pieces; N.L. neut. adj. alkanoclasticum, breaking alcanes.
Valid publication: DAI (X.), WANG (Y.N.), WANG (B.J.), LIU (S.J.) and ZHOU (Y.G.): Planomicrobium chinense sp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb. nov. and Planomicrobium alkanoclasticum comb. nov. Int. J. Syst. Evol. Microbiol., 2005, 55, 699-702.
Original article in IJSEM Online

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Planomicrobium chinense Dai et al. 2005, sp. nov.
Type strain: (see also StrainInfo.net) DX3-12 = AS 1.3454 = JCM 12466.
Sequence accession no. (16S rRNA gene) for the type strain: AJ697862.
Etymology: N.L. neut. adj. chinense, pertaining to China, where the type strain was isolated and studied.
Valid publication: DAI (X.), WANG (Y.N.), WANG (B.J.), LIU (S.J.) and ZHOU (Y.G.): Planomicrobium chinense sp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb. nov. and Planomicrobium alkanoclasticum comb. nov. Int. J. Syst. Evol. Microbiol., 2005, 55, 699-702.
Original article in IJSEM Online

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Planomicrobium flavidum Jung et al. 2009, sp. nov.
Type strain: (see also StrainInfo.net) ISL-41 = CCUG 56756 = KCTC 13261.
Sequence accession no. (16S rRNA gene) for the type strain: FJ265708.
Etymology: L. neut. adj. flavidum, pale yellow.
Valid publication: JUNG (Y.T.), KANG (S.J.), OH (T.K.), YOON (J.H.) and KIM (B.H.): Planomicrobium flavidum sp. nov., isolated from a marine solar saltern, and transfer of Planococcus stackebrandtii Mayilraj et al. 2005 to the genus Planomicrobium as Planomicrobium stackebrandtii comb. nov. Int. J. Syst. Evol. Microbiol., 2009, 59, 2929-2933.
Original article in IJSEM Online

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Planomicrobium glaciei Zhang et al. 2009, sp. nov.
Type strain: (see also StrainInfo.net) 0423 = CGMCC 1.6846 = JCM 15088.
Sequence accession no. (16S rRNA gene) for the type strain: EU036220.
Etymology: L. gen. n. glaciei, of ice, referring to the isolation source of the type strain, the China No. 1 glacier.
Valid publication: ZHANG (D.C.), LIU (H.C.), XIN (Y.H.), YU (Y.), ZHOU (P.J.) and ZHOU (Y.G.): Planomicrobium glaciei sp. nov., a psychrotolerant bacterium isolated from a glacier. Int. J. Syst. Evol. Microbiol., 2009, 59, 1387-1390.
Original article in IJSEM Online

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Planomicrobium koreense Yoon et al. 2001, sp. nov. (Type species of the genus.)
Type strain: (see also StrainInfo.net) JG07 = CIP 107134 = JCM 10704 = KCTC 3684.
Sequence accession no. (16S rRNA gene) for the type strain: AF144750.
Etymology: N.L. neut. adj. koreense, pertaining to Korea.
Valid publication: YOON (J.H.), KANG (S.S.), LEE (K.C.), LEE (E.S.), KHO (Y.H.), KANG (K.H.) and PARK (Y.H.): Planomicrobium koreense gen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites (Nakagawa et al. 1996) and Planococcus mcmeekinii (Junge et al. 1998) to the genus Planomicrobium. Int. J. Syst. Evol. Microbiol., 2001, 51, 1511-1520.
Original article in IJSEM Online

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Planomicrobium mcmeekinii (Junge et al. 1998) Yoon et al. 2001, comb. nov.
Type strain: (see also StrainInfo.net) S23F2 = ATCC 700539= CIP 105673.
Sequence accession no. (16S rRNA gene) for the type strain: AF041791.
Basonym: ¤ Planococcus mcmeekinii Junge et al. 1998.
Etymology: N.L. gen. n. mcmeekinii, of McMeekin, named after Thomas A. McMeekin, Australian microbiologist.
Valid publication: YOON (J.H.), KANG (S.S.), LEE (K.C.), LEE (E.S.), KHO (Y.H.), KANG (K.H.) and PARK (Y.H.): Planomicrobium koreense gen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites (Nakagawa et al. 1996) and Planococcus mcmeekinii (Junge et al. 1998) to the genus Planomicrobium. Int. J. Syst. Evol. Microbiol., 2001, 51, 1511-1520.
Original article in IJSEM Online

Note: According to Rules 27(3) and 30, this name is not validly published because the effective publication makes no reference to the deposit of the type strain in any publicly accessible service collection, but deposits in at least two recognized culture collections in different countries are documented. According to the Judicial Opinion 81, Planomicrobium mcmeekinii (Junge et al. 1998) Yoon et al. 2001 is to be considered to be validly published.
References:
1 EUZÉBY (J.P.) and TINDALL (B.J.): Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an Opinion. Int. J. Syst. Evol. Microbiol., 2004, 54, 293-301.
Original article in IJSEM Online
2 JUDICIAL COMMISSION OF THE INTERNATIONAL COMMITTEE ON SYSTEMATICS OF PROKARYOTES: Status of strains that contravene Rules 27 (3) and 30 of the International Code of Nomenclature of Bacteria. Opinion 81. Int. J. Syst. Evol. Microbiol., 2008, 58, 1755-1763.
Opinion 81 in IJSEM Online

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Planomicrobium okeanokoites (ZoBell and Upham 1944) Yoon et al. 2001, comb. nov.
Type strain: (see also StrainInfo.net) ATCC 33414= CCM 320 = CIP 105082 = IFO (now NBRC) 12536 = LMG 4030 = NCIMB 561 = VKM B-1175.
Sequence accession no. (16S rRNA gene) for the type strain: D55729.
Basonym: ¤ Flavobacterium okeanokoites ZoBell and Upham 1944 (Approved Lists 1980).
Other synonym: ¤ Planococcus okeanokoites (ZoBell and Upham 1944) Nakagawa et al. 1996.
Etymology: Gr. masc. n. okeanos, the ocean; Gr. fem. n. choite, bed; N.L. fem. gen. n. okeanokoites, of the ocean bed.
Valid publication: YOON (J.H.), KANG (S.S.), LEE (K.C.), LEE (E.S.), KHO (Y.H.), KANG (K.H.) and PARK (Y.H.): Planomicrobium koreense gen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites (Nakagawa et al. 1996) and Planococcus mcmeekinii (Junge et al. 1998) to the genus Planomicrobium. Int. J. Syst. Evol. Microbiol., 2001, 51, 1511-1520.
Original article in IJSEM Online

Notes:
1 According to Rules 27(3) and 30, this name is not validly published because the effective publication makes no reference to the deposit of the type strain in any publicly accessible service collection, but deposits in at least two recognized culture collections in different countries are documented. According to the Judicial Opinion 81, Planomicrobium okeanokoites (ZoBell and Upham 1944) Yoon et al. 2001 is to be considered to be validly published.
References:
1 EUZÉBY (J.P.) and TINDALL (B.J.): Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an Opinion. Int. J. Syst. Evol. Microbiol., 2004, 54, 293-301.
Original article in IJSEM Online
2 JUDICIAL COMMISSION OF THE INTERNATIONAL COMMITTEE ON SYSTEMATICS OF PROKARYOTES: Status of strains that contravene Rules 27 (3) and 30 of the International Code of Nomenclature of Bacteria. Opinion 81. Int. J. Syst. Evol. Microbiol., 2008, 58, 1755-1763.
Opinion 81 in IJSEM Online
2 In the paper by Yoon et al. 2001 the basonym is cited as Planococcus okeanokoites Nakagawa et al. 1996 and the new combination as Planomicrobium okeanokoites (Nakagawa et al. 1996) Yoon et al. 2001.

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Planomicrobium psychrophilum (Reddy et al. 2002) Dai et al. 2005, comb. nov.
Type strain: (see also StrainInfo.net) CMS 53or = DSM 14507 = MTCC 3812.
Sequence accession no. (16S rRNA gene) for the type strain: AJ314746.
Basonym: ¤ Planococcus psychrophilus Reddy et al. 2002.
Etymology: Gr. adj. psuchros, cold; N.L. adj. philus -a -um (from Gr. adj. philos -ê -on), friend, loving; N.L. neut. adj. psychrophilum, cold-loving.
Valid publication: DAI (X.), WANG (Y.N.), WANG (B.J.), LIU (S.J.) and ZHOU (Y.G.): Planomicrobium chinense sp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb. nov. and Planomicrobium alkanoclasticum comb. nov. Int. J. Syst. Evol. Microbiol., 2005, 55, 699-702.
Original article in IJSEM Online

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Planomicrobium soli Luo et al. 2014, sp. nov.
Type strain: (see also StrainInfo.net) XN13=CGMCC 1.12259=KCTC 33047.
Sequence accession no. (16S rRNA) for the type strain: JQ772482.
Etymology: L. gen. n. soli, of soil.
Source: Environmental - soil.
Valid publication: LUO, X., ZHANG, J., LI, D., XIN, Y., XIN, D. and FAN, L. 2014. Planomicrobium soli sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol., 64, 2700-2705.
Original article in IJSEM Online

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Planomicrobium stackebrandtii (Mayilraj et al. 2005) Jung et al. 2009, comb. nov.
Type strain: (see also StrainInfo.net) K22-03 = DSM 16419 = JCM 12481 = MTCC 6226.
Sequence accession no. (16S rRNA gene) for the type strain: AY437845.
Basonym: ¤ Planococcus stackebrandtii Mayilraj et al. 2005.
Etymology: N.L. gen. n. stackebrandtii, of Stackebrandt, to honour Erko Stackebrandt, a German microbiologist, for his valuable contributions to microbial taxonomy and molecular systematics.
Valid publication: JUNG (Y.T.), KANG (S.J.), OH (T.K.), YOON (J.H.) and KIM (B.H.): Planomicrobium flavidum sp. nov., isolated from a marine solar saltern, and transfer of Planococcus stackebrandtii Mayilraj et al. 2005 to the genus Planomicrobium as Planomicrobium stackebrandtii comb. nov. Int. J. Syst. Evol. Microbiol., 2009, 59, 2929-2933.
Original article in IJSEM Online

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