Genus Oceanobacillus

Warning: In the List of Prokaryotic names with Standing in Nomenclature, an arrow () only indicates the sequence of valid publication of names and does not mean that the last name in the sequence must be used (see: Introduction).

Number of species cited in this file: 17
Number of subspecies cited in this file: 2

Classification (Warning: see also the file "Classification of prokaryotes: Introduction").

 

Oceanobacillus Lu et al. 2002, gen. nov.
Type species: ¤ Oceanobacillus iheyensis Lu et al. 2002.
Etymology: Gr. n. okeanos, ocean; L. masc. n. bacillus, rod; N.L. masc. n. Oceanobacillus, an ocean rod.
References: VALIDATION LIST no. 85. Int. J. Syst. Evol. Microbiol., 2002, 52, 685-690. [LU (J.), NOGI (Y.) and TAKAMI (H.): Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol. Lett., 2001, 205, 291-297.]
Validation List no. 85 in IJSEM Online (PDF Format) - Effective publication Online

Oceanobacillus Lu et al. 2002 emend. Yumoto et al. 2005.
Type species: ¤ Oceanobacillus iheyensis Lu et al. 2002.
Etymology: Gr. n. okeanos, ocean; L. masc. n. bacillus, rod; N.L. masc. n. Oceanobacillus, an ocean rod.
Reference: YUMOTO (I.), HIROTA (K.), NODASAKA (Y.) and NAKAJIMA (K.): Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus. Int. J. Syst. Evol. Microbiol., 2005, 55, 1521-1524.
Original article in IJSEM Online

Oceanobacillus Lu et al. 2002 emend. Lee et al. 2006.
Type species: ¤ Oceanobacillus iheyensis Lu et al. 2002.
Etymology: Gr. n. okeanos, ocean; L. masc. n. bacillus, rod; N.L. masc. n. Oceanobacillus, an ocean rod.
Reference: LEE (J.S.), LIM (J.M.), LEE (K.C.), LEE (J.C.), PARK (Y.H.) and KIM (C.J.): Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int. J. Syst. Evol. Microbiol., 2006, 56, 251-257.
Original article in IJSEM Online

Oceanobacillus Lu et al. 2002 emend. Hirota et al. 2013.
Type species: ¤ Oceanobacillus iheyensis Lu et al. 2002.
Etymology: Gr. n. okeanos, ocean; L. masc. n. bacillus, rod; N.L. masc. n. Oceanobacillus, an ocean rod.
Reference: HIROTA (K.), AINO (K.), NODASAKA (Y.) and YUMOTO (I.): Oceanobacillus indicireducens sp. nov., a facultative alkaliphile that reduces an indigo dye. Int. J. Syst. Evol. Microbiol., 2013, 63,1437-1442.
Original article in IJSEM Online

Oceanobacillus Lu et al. 2002 emend. Hirota et al. 2013.
Reference: HIROTA, K., HANAOKA, Y., NODASAKA, Y. and YUMOTO, I. 2013. Oceanobacillus polygoni sp. nov., a facultatively alkaliphile isolated from indigo fermentation fluid. Int. J. Syst. Evol. Microbiol., 63, 3307-3312.
Original article in IJSEM Online

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Oceanobacillus caeni Nam et al. 2008, sp. nov.
Type strain: (see also StrainInfo.net) strain S-11 = CCUG 53534 = CIP 109363 = KCTC 13061.
Sequence accession no. (16S rRNA gene) for the type strain: AB275883.
Etymology: L. gen. n. caeni, of mud.
Reference: NAM (J.H.), BAE (W.) and LEE (D.H.): Oceanobacillus caeni sp. nov., isolated from a Bacillus-dominated wastewater treatment system in Korea. Int. J. Syst. Evol. Microbiol., 2008, 58, 1109-1113.
Original article in IJSEM Online

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Oceanobacillus chironomi Raats and Halpern 2007, sp. nov.
Type strain: (see also StrainInfo.net) strain T3944D = DSM 18262 = LMG 23627.
Sequence accession no. (16S rRNA gene) for the type strain: DQ298074.
Etymology: N.L. gen. n. chironomi, of Chironomus, named after the non-biting midge insect of the genus Chironomus (Chironomidae: Diptera) from which the type strain was isolated.
Reference: RAATS (D.) and HALPERN (M.): Oceanobacillus chironomi sp. nov., a halotolerant and facultatively alkaliphilic species isolated from a chironomid egg mass. Int. J. Syst. Evol. Microbiol., 2007, 57, 255-259.
Original article in IJSEM Online

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Oceanobacillus chungangensis Lee et al. 2013, sp. nov.
Type strain: (see also StrainInfo.net) CAU 1051=KCTC 33035=CCUG 63270.
Sequence accession no. (16S rRNA) for the type strain: JX233492.
Etymology: N.L. masc. adj. chungangensis, belonging to Chung-Ang University, where the taxonomic studies on this species were performed.
Source: Environmental.
Reference: LEE, D. C., KANG, H., WEERAWONGWIWAT, V., KIM, B., CHOI, Y.-W. and KIM, W. 2013. Oceanobacillus chungangensis sp. nov., isolated from a sand dune. Int. J. Syst. Evol. Microbiol., 63, 3666-3671.
Original article in IJSEM Online

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Oceanobacillus iheyensis Lu et al. 2002, sp. nov. (Type species of the genus.)
Type strain: (see also StrainInfo.net) strain HTE831 = JCM 11309 = DSM 14371.
Sequence accession no. (16S rRNA gene) for the type strain: AB010863.
Etymology: N.L. masc. adj. iheyensis, pertaining to the Iheya Ridge, Okinawa Trough, Japan.
References: VALIDATION LIST no. 85. Int. J. Syst. Evol. Microbiol., 2002, 52, 685-690. [LU (J.), NOGI (Y.) and TAKAMI (H.): Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol. Lett., 2001, 205, 291-297.]
Validation List no. 85 in IJSEM Online (PDF Format) - Effective publication Online

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Oceanobacillus indicireducens Hirota et al. 2013, sp. nov.
Type strain: (see also StrainInfo.net) strain A21 = JCM 17251 = NCIMB 14685.
Sequence accession no. (16S rRNA gene) for the type strain: AB623011.
Etymology: L. n. indicum, indigo; L. part. adj. reducens, reducing; N.L. part. adj. indicireducens, indigo-reducing.
Reference: HIROTA (K.), AINO (K.), NODASAKA (Y.) and YUMOTO (I.): Oceanobacillus indicireducens sp. nov., a facultative alkaliphile that reduces an indigo dye. Int. J. Syst. Evol. Microbiol., 2013, 63,1437-1442.
Original article in IJSEM Online

Note: In the paper by Hirota et al. 2013, the etymology is erroneously cited as follows: N.L. n. indicum (from Gr. indikon indic) indigo; L. part. adj. reducens; N.L. part. adj. indicireducens indigo-reducing.

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Oceanobacillus kapialis Namwong et al. 2009, sp. nov.
Type strain: (see also StrainInfo.net) strain SSK2-2 = KCTC 13177 = PCU 300 = TISTR 1858.
Sequence accession no. (16S rRNA gene) for the type strain: AB366005.
Etymology: Korean n. ka-pi, shrimp paste; N.L. n. kapium, shrimp paste; L. suff. -alis, adjectival suffix meaning pertaining to; N.L. masc. adj. kapialis, pertaining to shrimp paste, the source of isolation.
Reference: NAMWONG (S.), TANASUPAWAT (S.), LEE (K.C.) and LEE (J.S.): Oceanobacillus kapialis sp. nov., from fermented shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol., 2009, 59, 2254-2259.
Original article in IJSEM Online

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Oceanobacillus kimchii Whon et al. 2011, sp. nov.
Type strain: (see also StrainInfo.net) strain X50 = JCM 16803 = KACC 14914.
Sequence accession no. (16S rRNA gene) for the type strain: GU784860.
Etymology: N.L. gen. n. kimchii, of/from kimchi, a traditional Korean fermented food.
References: VALIDATION LIST no. 139. Int. J. Syst. Evol. Microbiol., 2011, 61, 1011-1013. [WHON (T.W.), JUNG (M.J.), ROH (S.W.), NAM (Y.D.), PARK (E.J.), SHIN (K.S.) and BAE (J.W.): Oceanobacillus kimchii sp. nov. Isolated from a traditional Korean fermented food. J. Microbiol., 2010, 48, 862-866.]
Validation List no. 139 in IJSEM Online - Effective publication Online

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Oceanobacillus limi Amoozegar et al. 2014, sp. nov.
Type strain: (see also StrainInfo.net) H9B=IBRC-M 10780=KCTC 13823=CECT 7997.
Sequence accession no. (16S rRNA) for the type strain: HQ433455.
Whole-genome sequence accession no. for the type strain: N/A.
Etymology: L. gen. masc. n. limi, of/from mud.
Source: Environmental - freshwater.
Valid publication: AMOOZEGAR, M. A., BAGHERI, M., MAKHDOUMI-KAKHKI, A., DIDARI, M., SCHUMANN, P., SPRÖER, C., SÁNCHEZ-PORRO, C. and VENTOSA, A. 2014. Oceanobacillus limi sp. nov., a moderately halophilic bacterium from a salt lake. Int. J. Syst. Evol. Microbiol., 64, 1284-1289.
Original article in IJSEM Online

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Oceanobacillus locisalsi Lee et al. 2010, sp. nov.
Type strain: (see also StrainInfo.net) strain CHL-21 = CCUG 56608 = KCTC 13253.
Sequence accession no. (16S rRNA gene) for the type strain: EU817570.
Etymology: L. masc. n. locus, place; L. masc. adj. salsus, salted, salt; N.L. gen. n. locisalsi, of a salted place.
Reference: LEE (S.Y.), OH (T.K.), KIM (W.) and YOON (J.H.): Oceanobacillus locisalsi sp. nov., isolated from a marine solar saltern. Int. J. Syst. Evol. Microbiol., 2010, 60, 2758-2762.
Original article in IJSEM Online

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Oceanobacillus luteolus Wu et al. 2014, sp. nov.
Type strain: (see also StrainInfo.net) WM-1=KCTC 33119=CGMCC 1.12406.
Sequence accession no. (16S rRNA) for the type strain: KC311561.
Whole-genome sequence accession no. for the type strain: N/A.
Etymology: L. masc. adj. luteolus, yellowish, referring to the colour of the colonies on LB agar.
Source: Environmental - soil.
Valid publication: WU, M., YANG, G., YU, Z., ZHUANG, L., JIN, Y. and ZHOU, S. 2014. Oceanobacillus luteolus sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol., 64, 1495-1500.
Original article in IJSEM Online

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Oceanobacillus neutriphilus Yang et al. 2010, sp. nov.
Type strain: (see also StrainInfo.net) strain A1g = CGMCC 1.7693 = JCM 15776.
Sequence accession no. (16S rRNA gene) for the type strain: EU709018.
Etymology: L. adj. neuter -tra -trum, neither the one nor the other, neither of two, which are neither active nor passive, used to refer to neutral pH; Gr. masc. adj. philos, friend loving; N.L. masc. adj. neutriphilus, preferring neutral pH.
Reference: YANG (J.Y.), HUO (Y.Y.), XU (X.W.), MENG (F.X.), WU (M.)  and WANG (C.S.): Oceanobacillus neutriphilus sp. nov., isolated from activated sludge in a bioreactor. Int. J. Syst. Evol. Microbiol., 2010, 60, 2409-2414.
Original article in IJSEM Online

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Oceanobacillus oncorhynchi Yumoto et al. 2005, sp. nov.
Type strain: (see also StrainInfo.net) strain R-2 = JCM 12661 = NCIMB 14022.
Sequence accession no. (16S rRNA gene) for the type strain: AB188089.
Etymology: N.L. gen. n. oncorhynchi, of Oncorhynchus, named after the rainbow trout Oncorhynchus mykiss, from which the type strain was isolated.
Reference: YUMOTO (I.), HIROTA (K.), NODASAKA (Y.) and NAKAJIMA (K.): Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus. Int. J. Syst. Evol. Microbiol., 2005, 55, 1521-1524.
Original article in IJSEM Online

Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006.
Type strain: (see also StrainInfo.net) strain R-2 = JCM 12661 = NCIMB 14022.
Sequence accession no. (16S rRNA gene) for the type strain: AB188089.
Etymology: N.L. gen. n. oncorhynchi, of Oncorhynchus, named after the rainbow trout Oncorhynchus mykiss, from which the type strain was isolated.
Reference: ROMANO, (I.), LAMA (L.), NICOLAUS (B.), POLI (A.), GAMBACORTA (A.) and GIORDANO (A.): Oceanobacillus oncorhynchi subsp. incaldanensis subsp. nov., an alkalitolerant halophile isolated from an algal mat collected from a sulfurous spring in Campania (Italy), and emended description of Oceanobacillus oncorhynchi. Int. J. Syst. Evol. Microbiol., 2006, 56, 805-810.
Original article in IJSEM Online

Note: Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006 is divided into subspecies (see: below).

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Oceanobacillus oncorhynchi subsp. incaldanensis Romano et al. 2006, subsp. nov.
Type strain: (see also StrainInfo.net) strain 20AG = ATCC BAA-954 = DSM 16557.
Sequence accession no. (16S rRNA gene) for the type strain: AJ640134.
Etymology: N.L. masc. adj. incaldanensis, pertaining to the Incaldana site, southern Italy, where the type strain was isolated.
Reference: ROMANO, (I.), LAMA (L.), NICOLAUS (B.), POLI (A.), GAMBACORTA (A.) and GIORDANO (A.): Oceanobacillus oncorhynchi subsp. incaldanensis subsp. nov., an alkalitolerant halophile isolated from an algal mat collected from a sulfurous spring in Campania (Italy), and emended description of Oceanobacillus oncorhynchi. Int. J. Syst. Evol. Microbiol., 2006, 56, 805-810.
Original article in IJSEM Online

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Oceanobacillus oncorhynchi subsp. oncorhynchi (Yumoto et al. 2005) Romano et al. 2006, subsp. nov.
Type strain: (see also StrainInfo.net) strain R-2 = JCM 12661 = NCIMB 14022.
Sequence accession no. (16S rRNA gene) for the type strain: AB188089.
Etymology: N.L. gen. n. oncorhynchi, of Oncorhynchus, named after the rainbow trout Oncorhynchus mykiss, from which the type strain was isolated.
Reference: ROMANO, (I.), LAMA (L.), NICOLAUS (B.), POLI (A.), GAMBACORTA (A.) and GIORDANO (A.): Oceanobacillus oncorhynchi subsp. incaldanensis subsp. nov., an alkalitolerant halophile isolated from an algal mat collected from a sulfurous spring in Campania (Italy), and emended description of Oceanobacillus oncorhynchi. Int. J. Syst. Evol. Microbiol., 2006, 56, 805-810.
Original article in IJSEM Online

Note: The original authorship, Yumoto et al. 2005, was corrected according to the new Rule 40d.
Reference: GARRITY (G.M.), LABEDA (D.P.) and OREN (A.): Judicial Commission of the International Committee on Systematics of Prokaryotes. XIIth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 3, 4 and 6 August 2008, Istanbul, Turkey. Int. J. Syst. Evol. Microbiol., 2011, 61, 2775-2780.
Original article in IJSEM Online

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Oceanobacillus pacificus Yu et al. 2014, sp. nov.
Type strain: (see also StrainInfo.net) XH204=DSM 25873=JCM 18381.
Sequence accession no. (16S rRNA) for the type strain: JX501255.
Whole-genome sequence accession no. for the type strain: N/A.
Etymology: L. masc. adj. pacificus, peaceful, referring to the Pacific Ocean from where the type strain was isolated.
Source: Environmental - marine (45° 58′ S 163° 11′ W).
Valid publication: YU, C., YU, S., ZHANG, Z., LI, Z. and ZHANG, X.-H. 2014. Oceanobacillus pacificus sp. nov., isolated from a deep-sea sediment. Int. J. Syst. Evol. Microbiol., 64, 1278-1283.
Original article in IJSEM Online

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Oceanobacillus picturae (Heyrman et al. 2003) Lee et al. 2006, comb. nov.
Type strain: (see also StrainInfo.net) strain DSM 14867 = KCTC 3821 = LMG 19492.
Sequence accession no. (16S rRNA gene) for the type strain: AJ315060.
Basonym: ¤ Virgibacillus picturae Heyrman et al. 2003.
Etymology: L. gen. n. picturae, of a painting.
Reference: LEE (J.S.), LIM (J.M.), LEE (K.C.), LEE (J.C.), PARK (Y.H.) and KIM (C.J.): Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int. J. Syst. Evol. Microbiol., 2006, 56, 251-257.
Original article in IJSEM Online

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Oceanobacillus polygoni Hirota et al. 2013, sp. nov.
Type strain: (see also StrainInfo.net) SA9=JCM 17252=NCIMB 14684.
Sequence accession no. (16S rRNA) for the type strain: AB750685.
Etymology: N.L. gen. n. polygoni, of Polygonum tictorium, referring to polygonum, the fermentation product from which the type strain was isolated.
Source: Industrial.
Reference: HIROTA, K., HANAOKA, Y., NODASAKA, Y. and YUMOTO, I. 2013. Oceanobacillus polygoni sp. nov., a facultatively alkaliphile isolated from indigo fermentation fluid. Int. J. Syst. Evol. Microbiol., 63, 3307-3312.
Original article in IJSEM Online

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Oceanobacillus profundus Kim et al. 2007, sp. nov.
Type strain: (see also StrainInfo.net) strain CL-MP28 = DSM 18246 = KCCM 42318.
Sequence accession no. (16S rRNA gene) for the type strain: DQ386635.
Etymology: L. masc. adj. profundus, deep, profound; intended to mean of/from the depths of the sea.
Reference: KIM (Y.G.), CHOI (D.H.), HYUN (S.) and CHO (B.C.): Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core. Int. J. Syst. Evol. Microbiol., 2007, 57, 409-413.
Original article in IJSEM Online

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Oceanobacillus sojae corrig. Tominaga et al. 2009, sp. nov.
Type strain: (see also StrainInfo.net) strain Y27 = CIP 109918 = JCM 15792 = NRRL B-59181.
Sequence accession no. (16S rRNA gene) for the type strain: AB473561.
Etymology: N.L. gen. n. sojae, of soja, referring to the source of isolation.
References: VALIDATION LIST no. 130. Int. J. Syst. Evol. Microbiol., 2009, 59, 2647-2648 [TOMINAGA (T.), AN (S.Y.), OYAIZU (H.) and YOKOTA (A.): Oceanobacillus soja sp. nov. isolated from soy sauce production equipment in Japan. J. Gen. Appl. Microbiol., 2009, 55, 225-232.]
Validation List no. 130 in IJSEM Online - Effective publication Online

Notes:
1 The original spelling of the specific epithet, soja (sic), has been corrected on validation according to Rule 61.
Reference: ASSOCIATE EDITOR, IJSEM: Validation List no. 130 (footnote #). Int. J. Syst. Evol. Microbiol., 2009, 59, 2647-2648.
Validation List no. 130 in IJSEM Online
2 The accession number CIP 109918 has been provided at the time of request for valid publication of the name.
Reference: ASSOCIATE EDITOR, IJSEM: Validation List no. 130 (footnote **). Int. J. Syst. Evol. Microbiol., 2009, 59, 2647-2648.
Validation List no. 130 in IJSEM Online

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