Name: Geminicoccaceae Proença et al. 2018

Category: Family

Proposed as: fam. nov.

Etymology: Ge.mi.ni.coc.ca’ce.a.e. N.L. masc. n. Geminicoccus, type genus of the family; L. fem. pl. n. suff. -aceae, ending to denote a family; N.L. fem. pl. n. Geminicoccaceae, the Geminicoccaceae family

Gender: feminine

Type genus: Geminicoccus Foesel et al. 2008

Effective publication: Proenca DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV. Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov. Syst Appl Microbiol 2018; 41:94-100.

IJSEM list: Oren A, Garrity GM. Validation list no. 182. List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 2018; 68:2130-2133.

Nomenclatural status: validly published under the ICNP

Taxonomic status: correct name

• Synonyms:

  • Name	Kind
    Tistrellaceae Chuvochina et al. 2024	heterotypic synonym, validly published under the ICNP

• Emendations:
  • Hördt et al. 2020 Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M. Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front Microbiol 2020; 11:468. Oren A, Garrity GM. List of changes in taxonomic opinion no. 32. Notification of changes in taxonomic opinion previously published outside the IJSEM. Int J Syst Evol Microbiol 2020; 70:4061-4090.
    Notes:
    • ⊕ Emendation accompanied by the inclusion of 3 genera in the family.

• Notes:
  • 🧕 Chuvochina et al. (2023) assigned this family to the order Geminicoccales Chuvochina et al. 2024. Publication: Chuvochina M, Mussig AJ, Chaumeil PA, Skarshewski A, Rinke C, Parks DH, Hugenholtz P. Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes. FEMS Microbiol Lett 2023; 0:0.
  • 🧕 Degli-Esposti et al. (2019) assigned this family to the order "Diaforabacterales" Degli Esposti et al. 2019. Publication: Degli Esposti M, Lozano L, Martinez-Romero E. Current phylogeny of Rhodospirillaceae: A multi-approach study. Mol Phylogenet Evol 2019; 139:106546.
  • 🧕 Proenca et al. (2018) assigned this family to the class Alphaproteobacteria Garrity et al. 2006. Publication: Proenca DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV. Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov. Syst Appl Microbiol 2018; 41:94-100.
  • 🧒 Proenca et al. (2018) assigned the genus Arboriscoccus Proença et al. 2018 to this family. Publication: Proenca DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV. Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov. Syst Appl Microbiol 2018; 41:94-100.
  • 🧒 Proenca et al. (2018) assigned the genus "Candidatus Alysiomicrobium" Levantesi et al. 2004 to this family. Publication: Proenca DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV. Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov. Syst Appl Microbiol 2018; 41:94-100.
  • 🧒 Proenca et al. (2018) assigned the genus "Candidatus Alysiosphaera" Kragelund et al. 2006 to this family. Publication: Proenca DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV. Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov. Syst Appl Microbiol 2018; 41:94-100.
  • 😢 The terminology used by the authors is in line with many other taxonomic studies and does not negatively affect their main results; some improvements may nevertheless be possible. Contrasting the term "chemotaxonomic" with "phenotypic" is not recommended. Using the term "phylogenetic data" (or equivalent) for sequence data is not advocated. See the LPSN phylogeny page for details. Publication: Göker M. What can genome analysis offer for bacteria? In: Bridge P, Smith D, Stackebrandt E (eds), Trends in the systematics of bacteria and fungi, CAB International, Wallingford, 2021, p. 255-281.
  • 🎰 The BRCs most frequently used for deposits in this group are: CIP: 4; NBRC: 4; LMG: 3; KCTC: 3; NCIMB: 2; DSM: 2; JCM: 1; MCCC: 1; ATCC: 1; CGMCC: 1.

Subdivision:

Number of child taxa with a validly published and correct name: 5
Number of child taxa with a validly published name, including synonyms: 5
Total number of child taxa: 15

• Child taxa:

  • Name	Nomenclatural status	Taxonomic status
    "Candidatus Alisphaera" Snaidr et al. 2002	not validly published	synonym (and no standing)
    "Candidatus Alysiomicrobium" Levantesi et al. 2004	inaccurate spelling	misspelling (and no standing)
    "Candidatus Alysiosphaera" Kragelund et al. 2006	inaccurate spelling	misspelling (and no standing)
    "Candidatus Alysiosphaera" Levantesi et al. 2004	inaccurate spelling	misspelling (and no standing)
    Arboricoccus corrig. Proença et al. 2018	validly published under the ICNP	correct name
    Arboriscoccus Proença et al. 2018	inaccurate spelling	misspelling
    Defluvicoccus Maszenan et al. 2005	inaccurate spelling	misspelling
    Defluviicoccus corrig. Maszenan et al. 2005	validly published under the ICNP	correct name
    Geminicoccus Foesel et al. 2008	validly published under the ICNP	correct name
    "Candidatus Halyseomicrobium" corrig. Levantesi et al. 2004	not validly published	synonym (and no standing)
    "Candidatus Halyseosphaera" corrig. Kragelund et al. 2006	not validly published	synonym (and no standing)
    "Candidatus Halysiomicrobium" corrig. Levantesi et al. 2004	not validly published	preferred name (not correct name)
    "Candidatus Halysiosphaera" corrig. Levantesi et al. 2004	not validly published	preferred name (not correct name)
    Marinimicrococcus Yang et al. 2024	validly published under the ICNP	correct name
    Tistrella Shi et al. 2003	validly published under the ICNP	correct name

Parent taxon: Rhodospirillales Pfennig and Trüper 1971 (Approved Lists 1980)

Assigned by: Proenca DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV. Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov. Syst Appl Microbiol 2018; 41:94-100.

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Record number: 4801