Title

Genus Alistipes

Warning: In the List of Prokaryotic names with Standing in Nomenclature, an arrow () only indicates the sequence of valid publication of names and does not mean that the last name in the sequence must be used (see: Introduction).

Number of species cited in this file: 7
Number of subspecies cited in this file: 0

Classification (Warning: see also the file "Classification of prokaryotes: Introduction").


For a detailed description of this taxon see Bergey’s Manual of Systematics of Archaea and Bacteria (BMSAB).


 

Alistipes Rautio et al. 2003, gen. nov.
Type species: ¤ Alistipes putredinis (Weinberg et al. 1937) Rautio et al. 2003.
Etymology: L. adj. alius, other; L. masc. n. stipes, a log, stock, post, trunk of a tree, stick; N.L. masc. n. alistipes, the other stick.
Valid publication: Validation List no. 94. Int. J. Syst. Evol. Microbiol., 2003, 53, 1701-1702.
Effective publication: RAUTIO (M.), EEROLA (E.), VÄISÄNEN-TUNKELROTT (M.L.), MOLITORIS (D.), LAWSON (P.), COLLINS (M.D.) and JOUSIMIES-SOMER (H.): Reclassification of Bacteroides putredinis (Weinberg et al. 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources. Syst. Appl. Microbiol., 2003, 26, 182-188.
Validation List no. 94 in IJSEM Online - Effective publication Online

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Alistipes finegoldii Rautio et al. 2003, sp. nov.
Type strain: (see also StrainInfo.net) AHN 2437 = CCUG 46020 = CIP 107999 = JCM 16770.
Sequence accession no. (16S rRNA gene) for the type strain: AY643083.
Etymology: N.L. gen. masc. n. finegoldii, of Finegold, in honor of Sydney Finegold, a researcher in anaerobic bacteriology and infectious diseases clinician.
Valid publication: Validation List no. 94. Int. J. Syst. Evol. Microbiol., 2003, 53, 1701-1702.
Effective publication: RAUTIO (M.), EEROLA (E.), VÄISÄNEN-TUNKELROTT (M.L.), MOLITORIS (D.), LAWSON (P.), COLLINS (M.D.) and JOUSIMIES-SOMER (H.): Reclassification of Bacteroides putredinis (Weinberg et al. 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources. Syst. Appl. Microbiol., 2003, 26, 182-188.
Validation List no. 94 in IJSEM Online - Effective publication Online

Note: The strain CIP 107999 has been provided on request for validation.
Reference: LISTS EDITOR, IJSEM: Validation List no. 94 (footnote ‡). Int. J. Syst. Evol. Microbiol., 2003, 53, 1701-1702.
Validation List no. 94 in IJSEM Online

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Alistipes indistinctus Nagai et al. 2010, sp. nov.
Type strain: (see also StrainInfo.net) YIT 12060 = DSM 22520 = JCM 16068.
Sequence accession no. (16S rRNA gene) for the type strain: AB490804.
Etymology: L. masc. adj. indistinctus, not properly distinguished or indistinct, referring to the biochemical characteristics compared with those of phylogenetically related species.
Valid publication: NAGAI (F.), MOROTOMI (M.), WATANABE (Y.), SAKON (H.) and TANAKA (R.): Alistipes indistinctus sp. nov. and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces. Int. J. Syst. Evol. Microbiol., 2010, 60, 1296-1302.
Original article in IJSEM Online

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Alistipes inops Shkoporov et al. 2015, sp. nov.
Type strain: (see also StrainInfo.net) 627=DSM 28863=VKM B-2859.
Sequence accession no. (16S rRNA) for the type strain: JRGF01000044.
Whole-genome sequence accession no. for the type strain: JRGF01000000.
Etymology: L. masc. adj. inops, helpless, destitute, indigent, poor, referring to its small genome size, lack of fermentation potential and scanty growth.
Source: Human.
Valid publication: SHKOPOROV, A. N., CHAPLIN, A. V., KHOKHLOVA, E. V., SHCHERBAKOVA, V. A., MOTUZOVA, O. V., BOZHENKO, V. K., KAFARSKAIA, L. I. and EFIMOV, B. A. 2015. Alistipes inops sp. nov. and Coprobacter secundus sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol., 65, 4580-4588.
Original article in IJSEM Online

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Alistipes onderdonkii Song et al. 2006, sp. nov.
Type strain: (see also StrainInfo.net) WAL 8169 = ATCC BAA-1178 = CCUG 48946 = JCM 16771.
Sequence accession no. (16S rRNA gene) for the type strain: AY974071.
Etymology: N.L. gen. masc. n. onderdonkii, of Onderdonk, to honour Andrew B. Onderdonk, an American microbiologist, for his contribution to increased knowledge about intestinal microbiota and anaerobic bacteria.
Valid publication: SONG (Y.), KÖNÖNEN (E.), RAUTIO (M.), LIU (C.), BRYK (A.), EEROLA (E.) and FINEGOLD (S.M.): Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin. Int. J. Syst. Evol. Microbiol., 2006, 56, 1985-1990.
Original article in IJSEM Online

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Alistipes putredinis (Weinberg et al. 1937) Rautio et al. 2003, comb. nov. (Type species of the genus.)
Type strain: (see also StrainInfo.net) ATCC 29800= CCUG 45780 = CIP 104286 = JCM 16772.
Sequence accession no. (16S rRNA gene) for the type strain: L16497.
Basonym: ¤ Bacteroides putredinis (Weinberg et al. 1937) Kelly 1957 (Approved Lists 1980).
Other synonyms: "Bacillus putredinis" Weinberg et al. 1937, "Ristella putredinis" (Weinberg et al. 1937) Prévot 1938, "Pseudobacterium putredinis" (Weinberg et al. 1937) Krasil'nikov 1949.
Etymology: L. n. putredo -inis, rottenness, putridity; L. gen. n. putredinis, of putridity.
Valid publication: Validation List no. 94. Int. J. Syst. Evol. Microbiol., 2003, 53, 1701-1702.
Effective publication: RAUTIO (M.), EEROLA (E.), VÄISÄNEN-TUNKELROTT (M.L.), MOLITORIS (D.), LAWSON (P.), COLLINS (M.D.) and JOUSIMIES-SOMER (H.): Reclassification of Bacteroides putredinis (Weinberg et al. 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources. Syst. Appl. Microbiol., 2003, 26, 182-188.
Validation List no. 94 in IJSEM Online - Effective publication Online

Note: The strains CIP 104286 and CCUG 45780 have been provided on request for validation.
Reference: LISTS EDITOR, IJSEM: Validation List no. 94 (footnote ‡). Int. J. Syst. Evol. Microbiol., 2003, 53, 1701-1702.
Validation List no. 94 in IJSEM Online

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Alistipes shahii Song et al. 2006, sp. nov.
Type strain: (see also StrainInfo.net) WAL 8301 = ATCC BAA-1179 = CCUG 48947 = JCM 16773.
Sequence accession no. (16S rRNA gene) for the type strain: AY974072.
Etymology: N.L. gen. masc. n. shahii, of Shah, to honour Haroun N. Shah, for his contribution to anaerobic bacteriology.
Valid publication: SONG (Y.), KÖNÖNEN (E.), RAUTIO (M.), LIU (C.), BRYK (A.), EEROLA (E.) and FINEGOLD (S.M.): Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin. Int. J. Syst. Evol. Microbiol., 2006, 56, 1985-1990.
Original article in IJSEM Online

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Alistipes timonensis Lagier et al. 2014, sp. nov.
Type strain: (see also StrainInfo.net) JC136=CSUR P148=DSM 25383.
Sequence accession no. (16S rRNA) for the type strain: JF824799.
Whole-genome sequence accession no. for the type strain: CAEG00000000.
Etymology: L. gen. masc. n. timonensis, of Timone, the name of the hospital where strain JC136 was isolated.
Source: Human.
Valid publication: Validation List no. 155. List of new names and new combinations previously effectively, but not validly, published. Int. J Syst. Evol. Microbiol., 64 (2014), 1-5.
Validation List Online
Effective publication: LAGIER, J.-C., ARMOUGOM, F., MISHRA, A. K., NGUYEN, T.-T., RAOULT, D. and FOURNIER, P.-E. 2012. Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov. Stand. Genomic Sci., 6, 315-324.
Effective publication Online

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